Show the code
knitr::read_chunk('Mapcode.r')Calabrian: Western Eurasia (WEA)
About
The Calabrian is defined as a subdivision of the Early Pleistocene spanning from ~1.8 Ma to 781 Ka. Considering that there are no paleoanthropological sites in Western Eurasia before this time, I am specifying the Calabrian over the broader designation of “Early Pleistocene”.
The following material is being developed to describe and illustrate Calabrian hominin and archaeological sites across Western Eurasia. The list and map below are considered comprehensive but unlikely complete. The latter point is due to the preponderance of archaeological sites that continue to arise. Further, many such sites might be considered dubious from poor temporal information, site disturbance, questionable artifacts, and so on. Thus, the list provided is one which reflects a sample of largely accepted Early Pleistocene sites in Western Eurasia.
Show the code
library(leaflet)
require(leaflet.providers)
library(dplyr)
require(knitr)
require(gapminder)
library(htmltools)
require(magrittr)
require(tidyr)
library(leaflegend)
require(skimr)
require(knitr)
require(RefManageR)
require(devtools)
require(flextable)
require(ftExtra)
require(officer)Show the code
coordsX <- read.csv(print("C:/Users/danny/Documents/git/SiteMaps/CalabrianWEA.csv"))[1] "C:/Users/danny/Documents/git/SiteMaps/CalabrianWEA.csv"Show the code
coords3 <- coordsX %>%select(-Country, -Ref.)
custom_div <- tags$div(
HTML("<h3>Custom Styled Div</h3><p>This is an absolutely positioned HTML element overlaying the map.</p>"),
style = "position: absolute;
top: 20px;
right: 20px;
z-index: 1000; /* Ensures the div is above map tiles but below some controls */
background-color: rgba(255, 255, 255, 0.8);
padding: 15px;
border-radius: 5px;
width: 200px;
box-shadow: 0 4px 8px rgba(0,0,0,0.1);"
)
symbols <- makeSymbolsSize(
values = 5,
shape = 'diamond',
color = 'black',
fillColor = 'blue',
opacity = 2,
baseSize = 9
)Show the code
f <- leaflet(data = coords3) %>%
addTiles() %>%
addProviderTiles(providers$Esri.WorldPhysical) %>%
# 1. Static Diamonds
addMarkers(
~Lng, ~Lat,
popup = paste("Site:", coords3$Site, "<br>", "Age:", coords3$Proposed.Absolute.Age),
icon = symbols
) %>%
# 2. Draggable Ghost Labels
addMarkers(
~Lng, ~Lat,
# This makes the blue pin invisible but keeps the 'drag handle' active
options = markerOptions(draggable = TRUE, opacity = 0),
label = ~Number,
labelOptions = labelOptions(
noHide = TRUE,
textOnly = TRUE,
direction = 'left', # Better for clicking directly on the number
style = list(
"color" = "black",
"font-family" = "serif",
"font-size" = "11px",
"font-weight" = "bold")
)
)Warning in validateCoords(lng, lat, funcName): Data contains 2 rows with either
missing or invalid lat/lon values and will be ignored
Warning in validateCoords(lng, lat, funcName): Data contains 2 rows with either
missing or invalid lat/lon values and will be ignoredShow the code
fShow the code
htmltools::save_html(f, file = "C:/Users/danny/Documents/git/SiteMaps/Output/paleomap3.html")Show the code
colnames(coords3) <- c("Number", "Site", "Proposed Absolute Age (Ma)", "Dating Method", "Paleontology", "Archaeology", "Hominin Fossils", "Lat", "Long", "Ref")
knitr::kable(coords3, align = "c")| Number | Site | Proposed Absolute Age (Ma) | Dating Method | Paleontology | Archaeology | Hominin Fossils | Lat | Long | Ref |
|---|---|---|---|---|---|---|---|---|---|
| 1 | Muhkai II | 1.77-2.1 | Paleomagnetism, Biostratigraphy | Archidiskodon meridionalis, Equus stenonis, Paleotragus priasovicus, Galogoral meneghinii, Pitymimomys pitymyoides, Canis estruscus, Vulpes alopecoides, Pliocrocuta perrieri | 1079 stone artifacts (Mode 1: cores, pebbles with removals, nodules, fragments, flakes, choppers, picks, retouched tools) | 42.14464 | 47.213140 | 14,28,36 | |
| 2 | Dmanisi Stratum A | 1.78-1.85 | 40Ar/39Ar, Paleomagnetism | Dicerorhinus etruscus etruscus | 122 lithic (Mode 1: flakes, cores, core/choppers | 41.20141 | 44.204166 | 10,11 | |
| ~ | Dmanisi Stratum B | ~1.77 | Struthio dmanisensis, Ochotona cf. largerli, Hypolagus brahygnathus, Apodemus dominans, Kowalskia sp., Cricetus sp., Mimomys tornensis, Mimomys ostramosensis, Parameriones cf. obeidiensis, Gerbillus sp., Marmota sp., Canis etruscus, Ursus etruscus, Martes sp., Megantereon cultridens, Homotherium crenatidens, Panthera gombaszoegensis, Pachycrocuta perrieri, Mammuthus meridionalis, Equus stenonis, Dicerorhinus etruscus etruscus, Gazella borbonica, Soergelia sp., Dmanisibos georgicus, Cervus perieri, Eucladocerus aff. senezensis, Arvernoceros, Dama nestii | 4446 stone artifacts (hammerstones, anvils, pebble tools, choppers, non-modified flakes) | NA | NA | 12,18 | ||
| 3 | Pirro Nord P13 | 1.3-1.7 | Biostratigraphy | Theropithecus sp., Hystrix refossa, Equus altidens, Panthera brevirostris, Homotherium latidens, Megantereon whitei, Acinonyx pardinensis, Canis mosbachensis | Mode 1 | 41.80167 | 15.384722 | 1,14 | |
| 4 | Fuenta Nueva 3 | 1.17-1.29 | Paleomagnetism, Biostratigraphy, ESR | Mammuthus meridionalis, Hippopotamus antiquus, Stephanorhinus etruscus, Equus altidens, Megaloceros slihacus, Cervus sp., Bovini, Hemitragus sp., Megantereon whitei, Ursus sp., Hystrix major, Allophaiomys bourgondiae, Allophaiomys chalinei, Mimomys | 54 stone artifacts (flakes, cores, trimmed pieces) | 37.71000 | -2.400000 | 14,27 | |
| 5 | Gediz | ~1.17-1.24 | 40Ar/39Ar, Paleomagnetism | 1 stone artifact (hard hammer flake) | 38.61000 | 28.790000 | 14,19 | ||
| 6 | Korolevo VII | 1.14-1.7 | Cosmogenic Nuclides, Paleomagnetism | 33 stone artifacts( Mode 1: chunks, flakes, cores, polyhedrons) | 48.15000 | 23.130000 | 13 | ||
| 7 | Barranco León | 1.05-1.81 | Biostratigraphy, Paleomagnetism, ESR | Mammuthus meridionalis, Hippopotamus antiquus, Megaloceros cf. obscurus, Pseudodama sp., Bovini gen. et sp. indet., Caprini indet (n. sp.), Hemitragus cf. albus, Equus altidens, Stephanorhinus cf. hundsheimensis, Megantereon cf. whitei, Pachycrocuta brevirostris, Ursus sp., Canis mosbachensis, Vulpes sp., Meles sp., Allophaiomys aff. lavocati, … | Cores, flakes, flake fragments, debitage, retouched pieces, angular fragments, modified and unmodified cobbles | Homo sp. | 37.72712 | -2.455180 | 14,38,39 |
| 8 | Kocabas | 1.1-1.6 | Paleomagnetism, 26Al/10Be, Biostratigraphy | Archidiskodon meridionalis meridionalis, Equus cf. altidens/E. cf. mygdoniensis, Equus cf. apolloniensis, Stephanorhinus cf. etuscus, Metacervoceros rhenanus, Arvernoceros sp., Cervalces (Libralces) ex gr. Minor-gallicus, Paleotragus sp, Gazella sp., Lagurodon arankae, Mimomys ex. gr. reidi-pusillus | N/A | Homo sp. | 37.86370 | 29.380450 | 21,33,40 |
| 9 | Pont de la Hulauderie | 0.98 | ESR | Mode 1 (choppers, flakes, pebble tools) | 47.92000 | 1.200000 | 8,35,29 | ||
| 10 | Pont de Lavaud | 0.96-1.28 | ESR | 1321 stone artifacts (Mode 1, hammerstones, cores, pebble tools, flakes, retouched flakes) | 46.25000 | 1.880000 | 14,15 | ||
| 11 | Le Vallonnet | 0.9-1.2 | ESR, Paleomagnatism, Biostratigraphy, U-series | Epivillafranchian biochron (Ammotragus europaeus, Bison schoetensacki, Hemitragus bonali) | 104 stone artifacts (Mode 1, hammerstones, pebble tools, flakes), cutmark taphonomy | 43.77000 | 7.460000 | 5,34 | |
| 12 | Bois-de-Riquet | 0.9-1.0 | Biostratigraphy | Allophiomys nutiensis, Mimomys savini, Stenocranius gregaloides, Iberomys huescarensis, Terricola arvalidens, Apodemus sylvaticus, Castillomys rivas, Allocricetus bursae, Epidalea calamita, Panthera onca gombaszoegensis, Pachycrocuta brevirostris, Canis mosbachensis, Stephanorhinus etruscus, Equus altidens | 23 stone artifacts (10 imported unmodified baslat pebbles, 1 core, 12 flakes) | 43.49360 | 3.426400 | 2,17 | |
| 13 | Atapureca Gran Dolina TD6 | 0.9-0.95 | Paleomagnatism, Biostratigraphy, ESR, ESR-OB, Thermoluminesence | Allophaiomys chalinei, Micromys minutus, Homotherium cf. latidens, Sus scrofa | 1046 stone artifacts (pebble tools, cores, hammerstones, flakes, retouched flakes) | H. antecessor | 42.35000 | -3.520000 | 22,29,34,6 |
| 14 | Monte Poggiolo | 0.85 | Paleomagnetism, Biostratigraphy | 1319 stone artifacts (Mode 1: cores, flakes) | 44.22000 | 12.040000 | 4,24 | ||
| 15 | Terre des Sablons | 0.83-1.27 | ESR | 1000+ stone artifacts (Mode 1, cores, flakes) | 46.95000 | 2.260000 | 7,35 | ||
| 13 | Atapuerca Sima del Elefante TE9 | 0.78-1.4 | Cosmogenic Nuclides, Paleomagnetism | Allophaiomys chalinei, A. lavocati, Pannonictis nestii, Iberomys aff. Nutiensis-thenii-huescarensis, Ugaromys nanus, Pliomys episcopalism, Mimomys savini, Castillomys rivas, apodemus sp., Glis sp., Eliomys cf. quercinus, Castor fiber, Scurius sp. | Mode 1 | Homo sp. | NA | NA | 14,34,35,30,26 |
| 17 | Cueva Negra del estrecho del rio Quipar | 0.78-0.99 | Paleomagnetism, Biostratigraphy | Mimomys savini, Pliomys episcopalis, Microtus sp. cf. chalinei, Microtus sp. cf. deucalion, Microtus huescarensis, Microtus brecciensis, Microtus, gregaloides, Prolagus calpensis, Megaloceros savini, Dama sp. cf. nestii vallonnetensis, Equus altidens, Stephanorhinus sp. cf. etruscus, Sus scrofa | >1000 stone artifacts (Mode 1 and Mode II: 1 bifacial handaxe, choppers, hammerstones, cores, side-scrapers, end-scrapers, denticulates, flakes) | Homo sp. | 39.02500 | -1.481000 | 41,42 |
| 18 | Happisburgh | 0.78-0.98 | Paleomagnatism, Biostratigraphy | Mammuthus cf. meridionalis, Equus suessenbornensis, Mimomys, Cervalces latifrons, Cervus elphus, Microtus | 78 flint artifacts (Mode 1: cores, flakes, flake tools) | 52.82000 | 1.530000 | 32 | |
| 19 | Barranc de la Boella | 0.78-0.96 | Paleomagnetism, 26Al/10Be, Biostratigraphy | Mammuthus meridionalis, Hippopotamus antiquus, Stephanorhinus cf. hundsheimensis, Mimomys savini, Victoriamys chalinei | >300 stone artifacts (Mode I and Mode II: choppers, chopper cores, cores, flakes, denticulates, notches, cleaver, pick) | 41.13605 | 1.169809 | 16,23 | |
| 20 | Vallparadís EVT8-7 | 0.77-0.99 | Paleomagnatism, Biostratigraphy, U-Series, ESR | Pachycrocuta brevirostris, Panthera gombaszoegensis, Stephanorhinus hundsheimensis, Hippopotamus antiquus, Pseudodama vallonnetensis, Canis mosbachensis, Elphus antiquus, Ursus deningeri, Sus sp. | 32,500+ stone artifacts (manuports, hammerstones, anvils, pebble tools, cores, flakes, denticulates, notches) | 41.56000 | 2.020000 | 14,9,20 | |
| 21 | Kozarnika | <0.77 | Biostratigraphy | Panthera schaubi, Chasmaporthetes lunensis, Xenocyon sp., Dolichopithecus sp., Croizetoceros ramosus, Cervis philisi, Eucladoceros sp., Cervalces sp., Procamptoceras brivatense, Gazellospira sp. | Mode 1 | 43.63000 | 22.680000 | 5,6 |
References
Show the code
bib <- ReadBib("C:/Users/danny/Documents/git/SiteMaps/references.bib", check = FALSE)
# 1. Create a working copy
bib_clean <- bib
bib_clean$urldate <- NULL
bib_clean$doi <- NULL
bib_clean$url <- NULL
# 2. Sort it alphabetically (Standard APA)
bib_clean <- sort(bib_clean)
# 3. Print with manual numbering
for (i in seq_along(bib_clean)) {
cat(paste0(i, ". ")) # This prints the number "1. ", "2. ", etc.
print(bib_clean[i], .opts = list(
style = "markdown",
bib.style = "authoryear",
first.inits = TRUE,
dashed = FALSE
))
cat("\n") # Adds a space between entries
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